Finding the right academic researchers can require searching thousands of laboratories, publications and clinical studies. Deepli helps you turn this information into usable researcher and contact data — either through custom academic life science contact lists or our PubMed data extraction software.
Find PIs, researchers, postdocs and laboratories by scientific topic, country, institution, publication year and other criteria. Or, if you regularly need PubMed data, use our software to run your own searches and receive the results directly on your computer.
We can build the contact list for you based on data resources that are the most appropriate to your needs.
Academic laboratory websites can be useful for finding research groups and principal investigators, while publication databases can identify researchers working on a particular scientific topic. Clinical trial and other publicly accessible sources can provide additional information where relevant. And if your research question requires combining several sources, we can combine them into a single structured dataset.
This means you don't have to adapt your requirements to an existing database. We adapt the data collection to your requirements.
The final dataset can include, where available:
First name · Last name · Job title · Institution · Laboratory · Email · Phone · Location · Publication information · Source URLs · Other relevant metadata
We start with your requirements and translate them into practical search criteria. This can include scientific keywords, research areas, countries, universities, research institutes, job titles, publication periods, publication types and other characteristics relevant to your project.
Depending on your objective, we can identify:
• Principal investigators and laboratory heads
• Academic researchers and scientists
• Postdoctoral researchers
• Research groups and laboratories
• Researchers working on specific scientific topics
• Authors of relevant scientific publications
• Clinical researchers and investigators
• Researchers associated with specific institutions or countries
• Researchers working on a very specific molecular target
• PIs in selected countries
• Laboratories using a particular technology
• Authors who published on a topic during a defined period
• Investigators involved in specific clinical trials
• Academic experts for a market research study
• KOLs for a product launch
• Research groups suitable for collaboration
• Contacts matching several scientific and geographic criteria
The result is a targeted academic life science contact list that is customary built for you. This can support:
KOL identification · Scientific landscape analysis · Market research · Competitive intelligence · Collaboration research · Survey recruitment · Business development
For more advanced projects, the same data extraction capabilities can be used to investigate companies, molecules, technologies, research pipelines and other information available on public websites. Our broader data engineering capability covers web scraping, publication data extraction, contact extraction, metadata extraction, API integrations, ETL, data cleansing, enrichment and custom automation. Projects are built around the client's requirements rather than forcing the research into a predefined database.
If you regularly need researchers or publication data from PubMed, you don't need to buy a new dataset every time. Deepli provides a simple PubMed extraction program that allows you to run your own searches and process the results locally. You don't need Python skills, you don't need to purchase an API subscription, and you don't need a long custom program.
You simply define your PubMed search, run a few commands in the Windows or Mac command line, and the resulting data is written to your local file. Three lines of code. Your search. Your data. On your computer.
The supplied workflow uses NCBI Entrez Direct and can be installed on Mac or Linux, with a Windows workflow available through Cygwin. The setup requires installing EDirect and adding it to your PATH.
Once installed, you can run the provided script and adapt it to your needs by years and search queries as required, receiving the result in a text file to a local directory.
You don't need to learn Python, build a scraper or maintain a large codebase.
You don't have to pay a third-party data provider every time you need another search.
Your team can extract emails or other data of interest from PubMed whenever it wants.
The software is designed for extraction of any kind of data present within Pubmed.
The resulting data is delivered directly to your local folder, so you stay autonomous from commercial systems.
The workflow is intentionally lightweight so you do not need to make your head around how to use the tool: just install the required component once, enter your search terms and publication years and the output will write to your local folder.
The PubMed extraction software was developed for a real customer requirement and has been in use by ATG Biosynthetics since 2023. The continued use of the software demonstrates its practical value beyond a one-time data extraction project.
That matters because the value of extraction software is not simply producing one spreadsheet. It is giving your team a repeatable way to obtain new research data whenever you need it.
The software can be used to process PubMed searches around your own scientific questions and retrieve structured publication and researcher information, including available contact information.
The extracted data can include:
• Last author name and email address
• Total emails present in affiliations
• Affiliations
• Journal name
• Publication year
• PMID
• Publication type
• Abstract text
• Publication title
• DOI number
The supplied extraction workflow processes PubMed records and extracts researcher names, affiliations and available email addresses from the returned records.
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Read Full Case Study →Deepli combines scientific data extraction with marketing and business development expertise. Rather than selling a fixed academic mailing list, we build datasets around your scientific topic, target audience, geography and business objective, using university websites, publications, clinical trials and other relevant public sources. We can either build a custom dataset around your exact requirements or give you the capability to extract PubMed data yourself at any moment of time with software. This makes the service useful both for a one-time research project and for organizations that need fresh academic contact data repeatedly.
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